PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G173000.1
Common NameB456_011G173000, LOC105775839
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 200aa    MW: 22373 Da    PI: 5.8078
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G173000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-1869119255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd +    + +r++lg+f +ae Aa a+++a+ +++g
  Gorai.011G173000.1  69 CYRGVRRRP-WGKFAAEIRDSTR---HgTRVWLGTFESAEAAALAYDQAAFAMRG 119
                         8********.**********422...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-3069128IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-2269129IPR016177DNA-binding domain
PROSITE profilePS5103222.93269127IPR001471AP2/ERF domain
SMARTSM003803.0E-3569133IPR001471AP2/ERF domain
PfamPF008473.5E-1469119IPR001471AP2/ERF domain
PRINTSPR003671.9E-107081IPR001471AP2/ERF domain
CDDcd000182.56E-1970128No hitNo description
PRINTSPR003671.9E-1093109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDSFLFESPN SISSSESSFG SPEFSSFNHN SLPFNENDSE EMLLYGLLTE VKTETSSSTE  60
KGSPTKEKCY RGVRRRPWGK FAAEIRDSTR HGTRVWLGTF ESAEAAALAY DQAAFAMRGS  120
AAILNFPVER VRESLEEMKC NQEEGCSPVV ALKRTHSMRR KMTSRSKKER DARINNAMVI  180
EDLGADYLEQ LLTQTASPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2865128164ATERF1
3gcc_A1e-2865128164ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012453806.11e-147PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC84e-77ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2T9E51e-147A0A0D2T9E5_G
STRINGPOPTR_0008s16610.16e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-60ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]